STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4385Putative exported protein; Similar to Escherichia coli O6 hypothetical protein c4013 SWALL:AAN82453 (EMBL:AE016767) (348 aa) fasta scores: E(): 4.5e-22, 30.65% id in 323 aa. (405 aa)    
Predicted Functional Partners:
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
 
 0.704
scrY
Putative sucrose porin; Similar to Klebsiella pneumoniae sucrose porin precursor ScrY SWALL:SCRY_KLEPN (SWALL:P27218) (505 aa) fasta scores: E(): 1.3e-125, 63.33% id in 510 aa, and to Erwinia amylovora porin ScrY SWALL:Q9F4A0 (EMBL:AJ250722) (514 aa) fasta scores: E(): 8.5e-118, 62.57% id in 521 aa.
  
     0.638
lamB
Maltoporin; Involved in the transport of maltose and maltodextrins. Belongs to the porin LamB (TC 1.B.3) family.
  
     0.586
galT
Similar to Escherichia coli galactose-1-phosphate uridylyltransferase GalT or GalB or b0758 SWALL:GAL7_ECOLI (SWALL:P09148) (348 aa) fasta scores: E(): 9.5e-111, 74.92% id in 343 aa.
  
 
 0.561
ECA3479
Hypothetical protein; Weakly similar to Ralstonia solanacearum hypothetical protein rsp0177 or rs04689 SWALL:Q8XTD6 (EMBL:AL646077) (740 aa) fasta scores: E(): 0.00056, 26.34% id in 410 aa.
  
     0.555
ECA4146
Similar to Ralstonia solanacearum hypothetical protein rsp0177 or rs04689 SWALL:Q8XTD6 (EMBL:AL646077) (740 aa) fasta scores: E(): 0.0057, 25.85% id in 410 aa.
  
     0.477
eamA
Similar to Escherichia coli probable amino acid metabolite efflux pump EamA or b1533 SWALL:EAMA_ECOLI (SWALL:P31125) (299 aa) fasta scores: E(): 9.6e-64, 60.66% id in 300 aa, and to Salmonella typhimurium probable amino acid metabolite efflux pump EamA or stm1517 SWALL:EAMA_SALTY (SWALL:Q56072) (299 aa) fasta scores: E(): 1.6e-65, 63.69% id in 303 aa.
       0.472
ECA4314
Putative exported protein; Similar to Yersinia pestis hypothetical y3253 SWALL:Q8CKN3 (EMBL:AE013927) (255 aa) fasta scores: E(): 2.6e-44, 48.56% id in 243 aa.
  
     0.459
scrB
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
   
 0.438
ECA2358
Putative aldolase; Similar to Rhizobium loti tagatose-1,6-bisphosphate aldolase mlr3411 SWALL:Q98GB1 (EMBL:AP003001) (302 aa) fasta scores: E(): 2.3e-75, 62.75% id in 298 aa, and to Streptococcus mutans tagatose 1,6-diphosphate aldolase LacD or smu.1493 SWALL:LACD_STRMU (SWALL:P26425) (325 aa) fasta scores: E(): 4.2e-06, 23.19% id in 319 aa.
  
  
 0.431
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.