STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppFSimilar to Escherichia coli dipeptide transport ATP-binding protein DppF or DppE or b3540 SWALL:DPPF_ECOLI (SWALL:P37313) (334 aa) fasta scores: E(): 5.5e-107, 89.09% id in 330 aa; Belongs to the ABC transporter superfamily. (336 aa)    
Predicted Functional Partners:
dppC
Dipeptide transport system permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppC or b3542 or c4357 or z4959 or ecs4422 SWALL:DPPC_ECOLI (SWALL:P37315) (300 aa) fasta scores: E(): 6e-98, 86.33% id in 300 aa.
  
  0.994
dppB
Dipeptide transport system permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppB or b3543 or c4358 or z4960 or ecs4423 SWALL:DPPB_ECOLI (SWALL:P37316) (339 aa) fasta scores: E(): 2.1e-118, 90.26% id in 339 aa.
  
  0.992
dppD
Dipeptide transport ATP-binding protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri dipeptide transport ATP-binding protein DppD or b3541 or z4958 or ecs4421 or sf3576 SWALL:DPPD_ECOLI (SWALL:P37314) (327 aa) fasta scores: E(): 1.9e-103, 88.07% id in 327 aa; Belongs to the ABC transporter superfamily.
 
  
 
0.980
dppA
Similar to Escherichia coli periplasmic dipeptide transport protein precursor DppA or b3544 SWALL:DPPA_ECOLI (SWALL:P23847) (535 aa) fasta scores: E(): 6.9e-186, 81.68% id in 535 aa.
 
  
  0.942
ECA2801
Similar to Escherichia coli periplasmic dipeptide transport protein precursor DppA or b3544 SWALL:DPPA_ECOLI (SWALL:P23847) (535 aa) fasta scores: E(): 9.4e-154, 66.66% id in 531 aa.
 
  
  0.904
ECA0135
ABC transporter permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppC or b3542 or c4357 or z4959 or ecs4422 SWALL:DPPC_ECOLI (SWALL:P37315) (300 aa) fasta scores: E(): 5.1e-44, 45.26% id in 285 aa, and to Ralstonia solanacearum probable transmembrane ABC transporter protein rsc1382 or rs04665 SWALL:Q8XZL3 (EMBL:AL646064) (299 aa) fasta scores: E(): 3.3e-62, 57.71% id in 298 aa.
     0.809
ECA4074
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3458 or agr_l_2741 SWALL:Q8UAB6 (EMBL:AE009276) (295 aa) fasta scores: E(): 5.9e-75, 64.18% id in 282 aa, and to Rhizobium meliloti putative dipeptide transport system permease ABC transporter protein dppc2 or r02411 or smc01527 SWALL:Q92N28 (EMBL:AL591790) (310 aa) fasta scores: E(): 4.7e-66, 54.8% id in 312 aa.
     0.788
ECA1006
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3435 or agr_l_2782 SWALL:Q8UAD9 (EMBL:AE009274) (341 aa) fasta scores: E(): 2.7e-69, 61.92% id in 302 aa, and to Rhizobium meliloti probable ABC transporter, permease protein ra1137 or sma2083 SWALL:Q92XV3 (EMBL:AE007299) (332 aa) fasta scores: E(): 5.3e-66, 65.92% id in 270 aa.
     0.787
oppC
Similar to Salmonella typhimurium oligopeptide transport system permease protein OppC or stm1744 SWALL:OPPC_SALTY (SWALL:P08006) (302 aa) fasta scores: E(): 8.6e-101, 86.09% id in 302 aa.
     0.768
ECA2961
Similar to Brucella abortus putative ABC transporter permease protein c batn1953.orf22 SWALL:Q8VQK5 (EMBL:AF454951) (296 aa) fasta scores: E(): 6.2e-46, 43.86% id in 269 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3267 or agr_l_3102 SWALL:Q8UAV0 (EMBL:AE009256) (291 aa) fasta scores: E(): 3.6e-45, 44.44% id in 270 aa.
     0.741
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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