STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcuRTwo-component response regulator; Similar to Escherichia coli, and Escherichia coli O157:H7 transcriptional regulatory protein DcuR or b4124 or z5726 or ecs5106 SWALL:DCUR_ECOLI (SWALL:P39271) (239 aa) fasta scores: E(): 5.7e-51, 55.83% id in 240 aa. (240 aa)    
Predicted Functional Partners:
dcuS
Two-component sensor kinase; Similar to Escherichia coli, and Escherichia coli O157:H7 sensor protein DcuS or b4125 or z5727 or ecs5107 SWALL:DCUS_ECOLI (SWALL:P39272) (543 aa) fasta scores: E(): 4.2e-114, 56.84% id in 533 aa.
 
  
 0.995
citA
Similar to Klebsiella pneumoniae sensor kinase CitA SWALL:CITA_KLEPN (SWALL:P52687) (547 aa) fasta scores: E(): 4.7e-85, 44.8% id in 529 aa.
 
   
 0.774
maeN
Similar to Bacillus subtilis Na(+)-malate symporter MaeN SWALL:MAEN_BACSU (SWALL:O05256) (448 aa) fasta scores: E(): 2.5e-95, 58.93% id in 414 aa.
  
   
 0.643
ECA2432
Two-component sensor kinase; Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein ypda or b2380 or z3645 or ecs3260 SWALL:YPDA_ECOLI (SWALL:P76523) (565 aa) fasta scores: E(): 1.9e-161, 75.67% id in 559 aa, and to Fusobacterium nucleatum autolysin sensor kinase fn0220 SWALL:Q8R6B2 (EMBL:AE010534) (541 aa) fasta scores: E(): 1e-73, 40.89% id in 538 aa.
 
 
 0.568
ECA4152
Putative two-component system sensor kinase; Similar to Yersinia pestis putative membrane protein ypo3943 or y3885 SWALL:Q8ZA74 (EMBL:AJ414159) (565 aa) fasta scores: E(): 5.9e-173, 82.11% id in 559 aa, and to Shigella flexneri 2a str. 2457T putative 2-component sensor protein yehu or s2325 SWALL:AAP17542 (EMBL:AE016985) (561 aa) fasta scores: E(): 8e-149, 68.84% id in 552 aa.
 
 
 0.561
narP
Similar to Escherichia coli nitrate/nitrite response regulator protein NarP or b2193 SWALL:NARP_ECOLI (SWALL:P31802) (215 aa) fasta scores: E(): 3e-46, 65.72% id in 213 aa.
  
   
 0.554
ECA4396
Putative membrane protein; No significant database matches.
       0.508
ECA4397
Hypothetical protein; No significant database matches.
       0.508
arbF
Similar to Erwinia chrysanthemi pts system, beta-glucoside-specific IIABC component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 4.9e-165, 70.14% id in 633 aa, and to Escherichia coli PTS system, beta-glucoside-specific IIABC component BglF or BglC or BglS or b3722 SWALL:PTBA_ECOLI (SWALL:P08722) (625 aa) fasta scores: E(): 2e-130, 57.07% id in 629 aa.
      
 0.486
ECA4400
Putative sodium:sulfate symporter; Similar to Spinacia oleracea 2-oxoglutarate/malate translocator, chloroplast precursor SodiT1 SWALL:SOT1_SPIOL (SWALL:Q41364) (569 aa) fasta scores: E(): 3e-87, 45.7% id in 466 aa, and to Vibrio vulnificus di-and tricarboxylate transporter vv20102 SWALL:AAO07076 (EMBL:AE016808) (467 aa) fasta scores: E(): 6e-127, 65.23% id in 466 aa.
       0.482
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.