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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcuSTwo-component sensor kinase; Similar to Escherichia coli, and Escherichia coli O157:H7 sensor protein DcuS or b4125 or z5727 or ecs5107 SWALL:DCUS_ECOLI (SWALL:P39272) (543 aa) fasta scores: E(): 4.2e-114, 56.84% id in 533 aa. (552 aa)    
Predicted Functional Partners:
dcuR
Two-component response regulator; Similar to Escherichia coli, and Escherichia coli O157:H7 transcriptional regulatory protein DcuR or b4124 or z5726 or ecs5106 SWALL:DCUR_ECOLI (SWALL:P39271) (239 aa) fasta scores: E(): 5.7e-51, 55.83% id in 240 aa.
 
  
 0.995
citB
Two-component response regulator; Similar to Klebsiella pneumoniae transcriptional regulatory protein CitB SWALL:CITB_KLEPN (SWALL:P52688) (234 aa) fasta scores: E(): 7.4e-29, 41.59% id in 226 aa.
 
 
 0.940
hpt
Similar to Salmonella typhimurium hypoxanthine phosphoribosyltransferase Hpt or stm0170 SWALL:HPRT_SALTY (SWALL:O33799) (178 aa) fasta scores: E(): 1.2e-54, 86.2% id in 174 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypoxanthine phosphoribosyltransferase Hpt or b0125 or c0154 or sf0122 SWALL:HPRT_ECOLI (SWALL:P36766) (178 aa) fasta scores: E(): 2.4e-54, 84.48% id in 174 aa; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
      
 0.631
narQ
Similar to Escherichia coli nitrate/nitrite sensor protein NarQ or b2469 SWALL:NARQ_ECOLI (SWALL:P27896) (566 aa) fasta scores: E(): 3.6e-131, 64.45% id in 557 aa.
  
   
 0.597
hrpX
Two-component sensor kinase; Similar to Erwinia chrysanthemi HrpX SWALL:Q8KUM4 (EMBL:AF448202) (450 aa) fasta scores: E(): 3.4e-115, 68.25% id in 441 aa, and to Erwinia amylovora sensor kinase HrpX SWALL:Q9X3S8 (EMBL:AF083877) (494 aa) fasta scores: E(): 9.5e-100, 56.13% id in 481 aa.
   
  
 0.597
arnT
Dolichyl-phosphate-mannose-protein mannosyltransferase-family protein; Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. Belongs to the glycosyltransferase 83 family.
  
   
 0.555
ECA0434
Similar to Rahnella aquatilis putative methyl-accepting chemotaxis protein I SWALL:Q93ET6 (EMBL:AF338038) (554 aa) fasta scores: E(): 2.3e-40, 34.6% id in 500 aa, and to Salmonella typhimurium methyl-accepting chemotaxis protein II Tar or CheM SWALL:MCP2_SALTY (SWALL:P02941) (553 aa) fasta scores: E(): 8.8e-39, 36.2% id in 464 aa.
    
 
 0.549
narX
Nitrate/nitrite sensor kinase; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri nitrate/nitrite sensor protein NarX or NarR or b1222 or z1998 or ecs1727 or sf1225 SWALL:NARX_ECOLI (SWALL:P10956) (598 aa) fasta scores: E(): 1.5e-115, 54.06% id in 603 aa.
  
   
 0.546
kdpE
Similar to Escherichia coli kdp operon transcriptional regulatory protein KdpE or b0694 SWALL:KDPE_ECOLI (SWALL:P21866) (225 aa) fasta scores: E(): 3.5e-68, 79.18% id in 221 aa.
      
 0.532
ECA4400
Putative sodium:sulfate symporter; Similar to Spinacia oleracea 2-oxoglutarate/malate translocator, chloroplast precursor SodiT1 SWALL:SOT1_SPIOL (SWALL:Q41364) (569 aa) fasta scores: E(): 3e-87, 45.7% id in 466 aa, and to Vibrio vulnificus di-and tricarboxylate transporter vv20102 SWALL:AAO07076 (EMBL:AE016808) (467 aa) fasta scores: E(): 6e-127, 65.23% id in 466 aa.
  
  
 0.532
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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