STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssuASimilar to Escherichia coli putative aliphatic sulfonates binding protein precursor SsuA or b0936 SWALL:SSUA_ECOLI (SWALL:P75853) (319 aa) fasta scores: E(): 9e-83, 72.78% id in 305 aa. (340 aa)    
Predicted Functional Partners:
ssuD
Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
 
 
 0.995
ssuC
Similar to Escherichia coli putative aliphatic sulfonates transport permease protein SsuC or b0934 SWALL:SSUC_ECOLI (SWALL:P75851) (263 aa) fasta scores: E(): 2.5e-77, 78.59% id in 257 aa.
 
 
 0.995
ssuB
Putative aliphatic sulfonates transport ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
 0.994
atsB
Putative sulfate ester transporter, permease component; Similar to Pseudomonas putida AtsB SWALL:Q9R9W6 (EMBL:AF126201) (535 aa) fasta scores: E(): 1.1e-103, 55.88% id in 510 aa, and to Bacillus subtilis putative aliphatic sulfonates transport permease protein SsuC SWALL:SSUC_BACSU (SWALL:P40401) (276 aa) fasta scores: E(): 1.6e-23, 36.14% id in 249 aa.
 
 
 0.983
astB
Sulfate ester ABC transporter permease protein; Similar to Pseudomonas putida AtsB SWALL:Q9R9W6 (EMBL:AF126201) (535 aa) fasta scores: E(): 2e-89, 51.46% id in 513 aa, and to Bacillus subtilis putative aliphatic sulfonates transport permease protein SsuC ssuC SWALL:SSUC_BACSU (SWALL:P40401) (276 aa) fasta scores: E(): 2.1e-26, 36.82% id in 239 aa.
 
 
 0.983
atsC
Sulfate ester ABC transporter ATP-binding protein; Similar to Pseudomonas putida AtsC SWALL:Q9WWU7 (EMBL:AF126201) (287 aa) fasta scores: E(): 3.8e-47, 57.02% id in 242 aa, and to Bacillus subtilis putative aliphatic sulfonates transport ATP-binding protein SsuB SWALL:SSUB_BACSU (SWALL:P97027) (274 aa) fasta scores: E(): 1.1e-35, 45.88% id in 231 aa.
 
 0.968
astC
Putative sulfate ester transporter, ATP-binding component; Similar to Pseudomonas putida AtsC SWALL:Q9WWU7 (EMBL:AF126201) (287 aa) fasta scores: E(): 2.6e-52, 63.59% id in 239 aa, and to Bacillus subtilis putative aliphatic sulfonates transport ATP-binding protein SsuB SWALL:SSUB_BACSU (SWALL:P97027) (274 aa) fasta scores: E(): 1.4e-34, 43.72% id in 247 aa, and to.
 
 0.967
atsR
Putative sulfate ester transporter, periplasmic binding component; Similar to Pseudomonas putida AtsR SWALL:Q9WWU6 (EMBL:AF126201) (347 aa) fasta scores: E(): 2.2e-49, 45.8% id in 334 aa, and to Bacillus subtilis putative aliphatic sulfonates binding protein precursor SsuA SWALL:SSUA_BACSU (SWALL:P40400) (332 aa) fasta scores: E(): 9.5e-14, 26.68% id in 341 aa.
  
  
 
0.929
atsR-2
Similar to Pseudomonas aeruginosa putative sulfate ester binding protein AstR or pa0186 SWALL:O33416 (EMBL:Z48540) (353 aa) fasta scores: E(): 2.4e-58, 51.18% id in 338 aa, and to Pseudomonas putida AtsR WALL:Q9WWU6 (EMBL:AF126201) (347 aa) fasta scores: E(): 9.8e-56, 49.85% id in 337 aa.
  
  
 
0.928
ECA3955
ABC transporter protein, membrane protein; Similar to Rhizobium meliloti putative transport system permease ABC transporter protein r02573 or smc02345 SWALL:Q92MP0 (EMBL:AL591791) (287 aa) fasta scores: E(): 1e-24, 33.46% id in 245 aa, and to Pseudomonas putida ABC-type transporter membrane permease component TauC SWALL:Q8KZR5 (EMBL:AB086390) (279 aa) fasta scores: E(): 2e-19, 29.41% id in 255 aa.
 
  
 0.859
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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