STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgoRSimilar to Escherichia coli galactonate operon transcriptional repressor DgoR or b3694/b3695 SWALL:DGOR_ECOLI (SWALL:P31460) (229 aa) fasta scores: E(): 6.9e-70, 80.61% id in 227 aa; putative GntR-family transcriptional regulator. (232 aa)    
Predicted Functional Partners:
dgoK
Similar to Escherichia coli 2-dehydro-3-deoxygalactonokinase DgoK or b3693 SWALL:DGOK_ECOLI (SWALL:P31459) (292 aa) fasta scores: E(): 3.5e-61, 54.76% id in 294 aa.
  
 0.960
dgoA1
DgoA protein [includes: 2-dehydro-3-deoxyphosphogalactonate aldolase; Catalyzes the dehydration of D-galactonate to 2-keto-3-deoxy- D-galactonate.
   
 0.908
dgoA2
Similar to the N-terminal region of Escherichia coli DgoA protein [includes: 2-dehydro-3-deoxyphosphogalactonate aldolase; galactonate dehydratase] DgoA or DgoD or b3692 SWALL:DGOA_ECOLI (SWALL:P31458) (587 aa) fasta scores: E(): 1.3e-38, 61.08% id in 203 aa, and similar, over the entire length, to Xanthomonas axonopodis 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase DgoA or xac1766 SWALL:Q8PLM9 (EMBL:AE011808) (210 aa) fasta scores: E(): 2.8e-38, 56.63% id in 196 aa.
     
 0.796
ECA4405
Conserved hypothetical protein; Similar to Salmonella typhi putative ATP/GTP-binding protein sty3967 SWALL:Q8Z2M0 (EMBL:AL627280) (408 aa) fasta scores: E(): 1.1e-44, 61.39% id in 417 aa, and to Escherichia coli hypothetical protein yidr or b3689 SWALL:YIDR_ECOLI (SWALL:P31455) (416 aa) fasta scores: E(): 7.8e-40, 61.08% id in 406 aa.
 
      0.682
nadR
Similar to Salmonella typhimurium transcriptional regulator NadR SWALL:NADR_SALTY (SWALL:P24518) (410 aa) fasta scores: E(): 1.1e-140, 85.5% id in 407 aa, and to Escherichia coli transcriptional regulator NadR or NadI or b4390 SWALL:NADR_ECOLI (SWALL:P27278) (410 aa) fasta scores: E(): 2.2e-139, 83.9% id in 410 aa.
   
    0.548
ECA0921
GntR-family transcriptional regulator; Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical transcriptional regulator YdfH SWALL:YDFH_ECOLI (SWALL:P77577) (228 aa) fasta scores: E(): 2e-51, 60.88% id in 225 aa, and to Salmonella typhimurium, and Salmonella typhi putative regulatory protein, GntR-family stm1510 or sty1551 SWALL:Q8XFZ6 (EMBL:AE008766) (228 aa) fasta scores: E(): 2.3e-50, 60% id in 225 aa.
  
  
 0.514
ECA2490
Putative maltoporin; Weakly similar to Klebsiella pneumoniae maltoporin precursor LamB SWALL:LAMB_KLEPN (SWALL:P31242) (429 aa) fasta scores: E(): 7.1e-14, 25.87% id in 398 aa, and to Escherichia coli maltoporin precursor LamB or MalB or b4036 SWALL:LAMB_ECOLI (SWALL:P02943) (446 aa) fasta scores: E(): 3.4e-05, 24.11% id in 394 aa.
  
     0.514
wecB
UDP-N-acetylglucosamine 2-epimerase; Catalyzes the reversible epimerization at C-2 of UDP-N- acetylglucosamine (UDP-GlcNAc) and thereby provides bacteria with UDP- N-acetylmannosamine (UDP-ManNAc), the activated donor of ManNAc residues.
   
  
 0.511
ECA1849
GntR-family transcriptional regulator; Similar to Escherichia coli fatty acyl responsive regulator farr or g30 or b0730 SWALL:FARR_ECOLI (SWALL:P13669) (240 aa) fasta scores: E(): 6e-25, 33.19% id in 235 aa, and to Shigella flexneri putative transcriptional regulator yidp or sf3779 SWALL:AAN45221 (EMBL:AE015385) (224 aa) fasta scores: E(): 1.8e-45, 54.01% id in 224 aa.
  
  
 0.425
ECA2115
Similar to Rhizobium meliloti putative GntR-family transcriptional regulator ra0971 or sma1759 SWALL:Q92YB3 (EMBL:AE007283) (226 aa) fasta scores: E(): 4.3e-29, 45.23% id in 210 aa, and to Brucella suis transcriptional regulator, putative bra1096 SWALL:AAN34260 (EMBL:AE014602) (237 aa) fasta scores: E(): 3e-22, 40.65% id in 214 aa.
  
  
 0.402
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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