STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4430Putative lipoprotein; Similar to Shewanella oneidensis hypothetical protein soa0070 SWALL:AAN53005 (EMBL:AE015914) (234 aa) fasta scores: E(): 1.5e-30, 42.01% id in 238 aa, and to Shewanella oneidensis hypothetical protein soa0150 SWALL:AAN53066 (EMBL:AE015921) (221 aa) fasta scores: E(): 7e-28, 42.22% id in 225 aa. (236 aa)    
Predicted Functional Partners:
ECA4429
Putative transposase; Similar to the C-terminal region of Shewanella oneidensis issod4, transposase SWALL:AAN53461 (EMBL:AE015911) (400 aa) fasta scores: E(): 2.2e-14, 66.12% id in 62 aa, and to Yersinia pestis putative transposase SWALL:O68702 (EMBL:AF053946) (99 aa) fasta scores: E(): 4.9e-17, 77.41% id in 62 aa.
       0.773
ECA4431
Hypothetical protein; No significant database matches. Strongly similar to ECA2106 (87.651% id) and ECA4356 (87.783% id) and.
       0.773
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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