STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4435Similar to Bacillus subtilis PTS system, lichenan-specific IIb component LicB or CelA SWALL:PTCB_BACSU (SWALL:P46318) (102 aa) fasta scores: E(): 1.5e-11, 48.95% id in 96 aa, and to Vibrio cholerae PTS system, cellobiose-specific iib component vc1281 SWALL:Q9KSH5 (EMBL:AE004207) (101 aa) fasta scores: E(): 4.4e-17, 53.46% id in 101 aa. (101 aa)    
Predicted Functional Partners:
ECA4434
PTS system, IIbc component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
 
 0.998
ECA4433
Pts system, cellobiose-specific IIa component; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, cellobiose-specific IIa component celc or b1736 or c2135 or z2766 or ecs2442 or sf1490 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 8e-14, 47.47% id in 99 aa.
 
 0.997
ECA3136
PTS system, cellobiose-specific IIa component; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, cellobiose-specific IIa component CelC or b1736 or c2135 or z2766 or ecs2442 or sf1490 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 3.9e-10, 41.23% id in 97 aa, and to Yersinia pestis PTS system, cellobiose-specific IIa component CelC or ypo2680 or y1253 SWALL:AAM84827 (EMBL:AJ414153) (115 aa) fasta scores: E(): 3.6e-12, 45.91% id in 98 aa.
 
 0.995
ECA4408
PTS system EIIc component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
 
 0.989
bglA
6-phospho-beta-glucosidase; Similar to Escherichia coli 6-phospho-beta-glucosidase BglA or b2901 SWALL:BGLA_ECOLI (SWALL:Q46829) (479 aa) fasta scores: E(): 2.5e-159, 76.21% id in 475 aa, and to Bacillus subtilis 6-phospho-beta-glucosidase BglA SWALL:BGLA_BACSU (SWALL:P42973) (479 aa) fasta scores: E(): 3.2e-128, 62.18% id in 476 aa. Also similar to ECA1871 (ArbB) (53.669% id), ECA0662 (51.875% id), ECA4407 (32.500% id), ECA2166 (50.103% id), ECA4387 (49.899% id), ECA0859 (40.733% id), ECA1451 (39.754% id) and to ECA3646 (429.878% id); Belongs to the glycosyl hydrolase 1 family.
  
 
 0.985
ECA2489
PTS system, cellobiose-specific IIa component; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, cellobiose-specific IIa component CelC or b1736 or c2135 or z2766 or ecs2442 or sf1490 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 1.8e-14, 48.45% id in 97 aa.
 
 0.955
ECA3648
PTS system, cellobiose-specific IIa component; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, cellobiose-specific IIa component CelC or b1736 or c2135 or z2766 or ecs2442 or sf1490 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 6.3e-14, 43.86% id in 114 aa.
 
 0.948
ptsH
PTS system phosphocarrier protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri phosphocarrier protein Hpr or b2415 or c2950 or z3681 or ecs3287 or stm2431 or sty2667 or t0426 or sf2470 SWALL:PTHP_ECOLI (SWALL:P07006) (85 aa) fasta scores: E(): 1e-27, 97.64% id in 85 aa.
    
  0.945
licC
PTS system, lichenan-specific IIc component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
 
 0.945
ECA3645
Similar to Bacillus subtilis PTS system, lichenan-specific IIb component LicB or CelA SWALL:PTCB_BACSU (SWALL:P46318) (102 aa) fasta scores: E(): 2.9e-11, 46% id in 100 aa.
     
  0.944
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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