STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4437MFS efflux transporter; Similar to Pseudomonas putida hypothetical protein pp2034 SWALL:AAN67648 (EMBL:AE016781) (419 aa) fasta scores: E(): 1.6e-73, 54.35% id in 390 aa, and to Bradyrhizobium japonicum Bll1005 protein bll1005 SWALL:BAC46270 (EMBL:AP005938) (402 aa) fasta scores: E(): 4.5e-66, 51.26% id in 394 aa. (396 aa)    
Predicted Functional Partners:
ECA4436
LacI-family transcriptional regulator; Similar to Escherichia coli cryptic asc operon repressor AscG or b2714 SWALL:ASCG_ECOLI (SWALL:P24242) (336 aa) fasta scores: E(): 3.8e-74, 58.61% id in 331 aa, and to Salmonella typhimurium putative transcriptional regulator stm3012 SWALL:Q8ZMA3 (EMBL:AE008838) (340 aa) fasta scores: E(): 3.5e-60, 49.85% id in 335 aa.
       0.566
ECA0957
Putative membrane protein; Similar to Bradyrhizobium japonicum MFS permease bll5460 SWALL:BAC50725 (EMBL:AP005955) (416 aa) fasta scores: E(): 2.7e-31, 31.23% id in 397 aa, and to Agrobacterium tumefaciens MFS permease atu0960 or agr_c_1756 SWALL:Q8UGS5 (EMBL:AE009060) (427 aa) fasta scores: E(): 9e-27, 31.8% id in 393 aa.
  
     0.511
ECA0071
Putative monooxygenase; Similar to Bradyrhizobium japonicum Bll6902 protein SWALL:BAC52167 (EMBL:AP005960) (378 aa) fasta scores: E(): 3.4e-73, 58.99% id in 339 aa, and to Bradyrhizobium japonicum LuxA-like protein bll7033 SWALL:BAC52298 (EMBL:AP005960) (408 aa) fasta scores: E(): 3.7e-14, 28.77% id in 358 aa.
  
     0.500
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.