STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmH50S ribosomal protein L34; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri 50S ribosomal protein L34 SWALL:RL34_ECOLI (SWALL:P02437) (46 aa) fasta scores: E(): 6.4e-17, 95.65% id in 46 aa; Belongs to the bacterial ribosomal protein bL34 family. (46 aa)    
Predicted Functional Partners:
rpmB
50S ribosomal protein L28; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 50S ribosomal protein L28 RpmB or b3637 or c4461 or z5061 or ecs4512 or sf3676 SWALL:RL28_ECOLI (SWALL:P02428) (77 aa) fasta scores: E(): 3.3e-29, 93.5% id in 77 aa; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.984
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.983
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.982
rpmF
50S ribosomal protein L32; Similar to Escherichia coli, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri 50S ribosomal protein L32 RpmF or b1089 or z1728 or ecs1467 or stm1191 or sty1230 or sf1093 SWALL:RL32_ECOLI (SWALL:P02435) (56 aa) fasta scores: E(): 2.5e-18, 87.5% id in 56 aa; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.979
rpsP
30S ribosomal protein S16; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 30S ribosomal protein S16 RpsP or b2609 or c3130 or z3903 or ecs3472 or sf2669 SWALL:RS16_ECOLI (SWALL:P02372) (82 aa) fasta scores: E(): 5.4e-24, 78.04% id in 82 aa; Belongs to the bacterial ribosomal protein bS16 family.
   
 
 0.979
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
  
 0.979
rpsU
30S ribosomal subunit protein S21; Identical to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, Shigella flexneri, and Yersinia pestis 30S ribosomal protein S21 RpsU or b3065 or c3816 or z4418 or ecs3948 or stm3209 or sty3388 or t3129 or sf3106 or ypo0645 or y3535 SWALL:RS21_ECOLI (SWALL:P02379) (70 aa) fasta scores: E(): 2.7e-24, 100% id in 70 aa; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.978
rplM
50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.976
rpmI
50S ribosomal subunit protein L35; Similar to Escherichia coli, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri 50S ribosomal protein L35 rpmi or b1717 or z2746 or ecs2424 or stm1335 or sty1776 or sf1514 SWALL:RL35_ECOLI (SWALL:P07085) (64 aa) fasta scores: E(): 4.3e-23, 92.18% id in 64 aa; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.976
rpsO
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
 
 0.975
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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