STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4449Similar to Escherichia coli hypothetical protein ytfg or b4211 SWALL:YTFG_ECOLI (SWALL:P39315) (286 aa) fasta scores: E(): 6e-61, 66.54% id in 278 aa, and to Yersinia pestis hypothetical protein ypo1645 or y1806 SWALL:Q8ZFP8 (EMBL:AJ414149) (285 aa) fasta scores: E(): 3.2e-65, 68.79% id in 282 aa. (283 aa)    
Predicted Functional Partners:
nuoC
NADH-quinone oxidoreductase chain C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 0.997
ECA0923
Similar to Synechocystis sp. hypothetical protein slr0317 SWALL:Q55924 (EMBL:D64005) (287 aa) fasta scores: E(): 3.1e-18, 31.95% id in 291 aa, and to Rhizobium loti hypothetical protein mll1871 SWALL:Q98JM9 (EMBL:AP002998) (293 aa) fasta scores: E(): 2.1e-17, 29.49% id in 295 aa, and to Escherichia coli hypothetical protein YtfG SWALL:YTFG_ECOLI (SWALL:P39315) (286 aa) fasta scores: E(): 1.9e-12, 29.23% id in 236 aa.
  
  
 
0.928
ECA3603
Putative flavodoxin; Similar to Agrobacterium tumefaciens flavodoxin WrbA or atu4201 or agr_l_1309 SWALL:Q8U897 (EMBL:AE009349) (193 aa) fasta scores: E(): 1.2e-43, 65.73% id in 178 aa, and to Escherichia coli hypothetical 19.6 kDa protein SWALL:Q9F7X7 (EMBL:AF270497) (183 aa) fasta scores: E(): 3.8e-49, 69.78% id in 182 aa.
 
  
  0.912
ECA0951
Similar to Xanthomonas axonopodis NAD(P)H oxidoreductase xac2229 SWALL:Q8PKE6 (EMBL:AE011860) (198 aa) fasta scores: E(): 1.5e-38, 53.88% id in 193 aa, and to Pseudomonas aeruginosa probable NAD(P)H oxidoreductase pa1225 SWALL:Q9I4B3 (EMBL:AE004552) (208 aa) fasta scores: E(): 1.9e-36, 53.6% id in 194 aa.
    
  0.901
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
     
  0.900
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
 0.825
ECA4450
Conserved hypothetical protein; Similar to Escherichia coli, and Shigella flexneri hypothetical protein ytfh or b4212 or sf4275 SWALL:YTFH_ECOLI (SWALL:P39316) (126 aa) fasta scores: E(): 6.5e-28, 66.95% id in 115 aa, and to Salmonella typhimurium, and Salmonella typhi putative transcriptional regulator ytfh or stm4402 or sty4760 SWALL:Q8XGE7 (EMBL:AE008906) (128 aa) fasta scores: E(): 3.1e-27, 65.48% id in 113 aa.
 
     0.799
nuoF
NADH-quinone oxidoreductase chain F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
 0.791
nuoB
NADH-quinone oxidoreductase chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
   
 0.775
nuoG
NADH-quinone oxidoreductase chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.
   
 0.766
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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