STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4450Conserved hypothetical protein; Similar to Escherichia coli, and Shigella flexneri hypothetical protein ytfh or b4212 or sf4275 SWALL:YTFH_ECOLI (SWALL:P39316) (126 aa) fasta scores: E(): 6.5e-28, 66.95% id in 115 aa, and to Salmonella typhimurium, and Salmonella typhi putative transcriptional regulator ytfh or stm4402 or sty4760 SWALL:Q8XGE7 (EMBL:AE008906) (128 aa) fasta scores: E(): 3.1e-27, 65.48% id in 113 aa. (139 aa)    
Predicted Functional Partners:
ECA4449
Similar to Escherichia coli hypothetical protein ytfg or b4211 SWALL:YTFG_ECOLI (SWALL:P39315) (286 aa) fasta scores: E(): 6e-61, 66.54% id in 278 aa, and to Yersinia pestis hypothetical protein ypo1645 or y1806 SWALL:Q8ZFP8 (EMBL:AJ414149) (285 aa) fasta scores: E(): 3.2e-65, 68.79% id in 282 aa.
 
     0.799
ECA0371
Putative transcriptional regulator; Similar to Pseudomonas putida conserved hypothetical protein pp0502 SWALL:AAN66130 (EMBL:AE016775) (147 aa) fasta scores: E(): 8e-26, 55.14% id in 136 aa. Note that there are no significant database matches to enterobacterial species.
  
     0.586
nadR
Similar to Salmonella typhimurium transcriptional regulator NadR SWALL:NADR_SALTY (SWALL:P24518) (410 aa) fasta scores: E(): 1.1e-140, 85.5% id in 407 aa, and to Escherichia coli transcriptional regulator NadR or NadI or b4390 SWALL:NADR_ECOLI (SWALL:P27278) (410 aa) fasta scores: E(): 2.2e-139, 83.9% id in 410 aa.
   
    0.524
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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