STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmsRPutative hemin storage protein; Similar to Yersinia pestis HmsR or y2357 SWALL:Q56941 (EMBL:U22837) (457 aa) fasta scores: E(): 3.8e-136, 73.24% id in 441 aa. (442 aa)    
Predicted Functional Partners:
hmsF
Putative hemin storage lipoprotein; Similar to Yersinia pestis HmsF SWALL:Q56940 (EMBL:U22837) (673 aa) fasta scores: E(): 8.5e-166, 58.42% id in 671 aa.
 
  
 0.981
hmsH
Putative hemin storage protein; Similar to Yersinia pestis HmsH or ypo1951 SWALL:Q56939 (EMBL:U22837) (822 aa) fasta scores: E(): 6e-141, 44% id in 825 aa.
 
 
 0.975
hmsS
Putative hemin storage protein; Similar to Yersinia pestis HmsS or ypo1954 or y2356 SWALL:P74989 (EMBL:U22837) (155 aa) fasta scores: E(): 8.8e-07, 28.77% id in 139 aa.
  
 
 0.875
arnD
Conserved hypothetical protein; Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily.
  
  
 0.592
bcsB
Cellulose synthase catalytic subunit [UDP-forming] (pseudogene); Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
  
 
 0.589
sseB
Enhanced serine sensitivity protein; Similar to Escherichia coli, and Shigella flexneri protein SseB or b2522 or sf2569 SWALL:SSEB_ECOLI (SWALL:P31143) (258 aa) fasta scores: E(): 1.6e-51, 55.11% id in 254 aa.
  
 
 0.587
arcB
Similar to Escherichia coli, and Shigella flexneri aerobic respiration control sensor protein ArcB or b3210 or sf3250 SWALL:ARCB_ECOLI (SWALL:P22763) (778 aa) fasta scores: E(): 8.6e-180, 75.88% id in 788 aa, and to Yersinia pestis aerobic respiration control sensor/response regulatory protein ArcB SWALL:Q8ZB69 (EMBL:AJ414157) (778 aa) fasta scores: E(): 3.6e-190, 80.71% id in 788 aa.
  
 
 0.563
ECA3886
Putative membrane protein; Similar to the C-terminal region of many including Pseudomonas aeruginosa hypothetical protein Pa2870 SWALL:Q9HZX6 (EMBL:AE004713) (525 aa) fasta scores: E(): 1.9e-17, 39.39% id in 165 aa, and to Shewanella oneidensis ggdef domain protein so4457 SWALL:AAN57422 (EMBL:AE015878) (485 aa) fasta scores: E(): 2.1e-17, 39.03% id in 187 aa.
  
  
 0.562
ECA4455
Similar to Xanthomonas axonopodis hypothetical protein Xac3950 SWALL:Q8PFN0 (EMBL:AE012044) (293 aa) fasta scores: E(): 9.4e-41, 37.94% id in 282 aa, and to Vibrio cholerae hypothetical protein Vc1772 SWALL:Q9KR71 (EMBL:AE004254) (286 aa) fasta scores: E(): 3e-24, 33.21% id in 283 aa.
  
    0.506
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
   
 
 0.504
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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