STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmsFPutative hemin storage lipoprotein; Similar to Yersinia pestis HmsF SWALL:Q56940 (EMBL:U22837) (673 aa) fasta scores: E(): 8.5e-166, 58.42% id in 671 aa. (671 aa)    
Predicted Functional Partners:
hmsR
Putative hemin storage protein; Similar to Yersinia pestis HmsR or y2357 SWALL:Q56941 (EMBL:U22837) (457 aa) fasta scores: E(): 3.8e-136, 73.24% id in 441 aa.
 
  
 0.981
hmsH
Putative hemin storage protein; Similar to Yersinia pestis HmsH or ypo1951 SWALL:Q56939 (EMBL:U22837) (822 aa) fasta scores: E(): 6e-141, 44% id in 825 aa.
 
   
 0.954
hmsS
Putative hemin storage protein; Similar to Yersinia pestis HmsS or ypo1954 or y2356 SWALL:P74989 (EMBL:U22837) (155 aa) fasta scores: E(): 8.8e-07, 28.77% id in 139 aa.
     
 0.803
ECA2294
Putative glycosyl transferase; Similar to Pseudomonas putida beta-(1-3)-glucosyl transferase, putative pp1526 SWALL:AAN67147 (EMBL:AE016779) (863 aa) fasta scores: E(): 2.2e-39, 32.08% id in 455 aa, and to Synechococcus elongatus cellulose synthase tll0007 SWALL:BAC07560 (EMBL:AP005369) (736 aa) fasta scores: E(): 2.9e-18, 26.26% id in 552 aa.
 
  
 0.646
ECA0505
Probable capsular polysaccharide bisynthesis glycosyl transferase; Similar to Vibrio vulnificus putative glycosyltransferase protein vv12308 SWALL:AAO10684 (EMBL:AE016804) (332 aa) fasta scores: E(): 7.6e-86, 64.81% id in 324 aa, and to Rhizobium meliloti putative glycosyltransferase protein rb1330 or smb21500 SWALL:Q92U13 (EMBL:AL603646) (347 aa) fasta scores: E(): 5.2e-37, 37.42% id in 326 aa.
  
  
 0.592
arnA
Probable formyl transferase; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the C-terminal section; belongs to the NAD(P)-dependent epimerase/dehydratase family. UDP-glucuronic acid decarboxylase subfamily.
  
  
 0.505
ECA4455
Similar to Xanthomonas axonopodis hypothetical protein Xac3950 SWALL:Q8PFN0 (EMBL:AE012044) (293 aa) fasta scores: E(): 9.4e-41, 37.94% id in 282 aa, and to Vibrio cholerae hypothetical protein Vc1772 SWALL:Q9KR71 (EMBL:AE004254) (286 aa) fasta scores: E(): 3e-24, 33.21% id in 283 aa.
       0.485
arnT
Dolichyl-phosphate-mannose-protein mannosyltransferase-family protein; Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. Belongs to the glycosyltransferase 83 family.
  
  
 0.447
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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