Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smvAPutative signal transduction protein (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF00990, DE GGDEF domain, score 5.1e-06. (500 aa)    
Predicted Functional Partners:
emrA
Similar to Erwinia chrysanthemi EmrA protein EmrA SWALL:Q93KB1 (EMBL:AJ410307) (391 aa) fasta scores: E(): 7.9e-104, 72.63% id in 391 aa, and to Escherichia coli multidrug resistance protein A EmrA or b2685 SWALL:EMRA_ECOLI (SWALL:P27303) (390 aa) fasta scores: E(): 5.7e-94, 68.28% id in 391 aa.
 
 
 0.679
ECA2927
Probable transporter; Similar to Escherichia coli bicyclomycin resistance protein Bcr or BicA or BicR or Sur or SuxA or b2182 SWALL:BCR_ECOLI (SWALL:P28246) (396 aa) fasta scores: E(): 2.1e-29, 30.52% id in 380 aa, and to Pseudomonas putida multidrug resistance transporter, bcr/cfla family pp3304 SWALL:AAN68911 (EMBL:AE016786) (412 aa) fasta scores: E(): 3.5e-93, 65.33% id in 401 aa.
  
   
 0.573
bcr
Similar to Escherichia coli bicyclomycin resistance protein Bcr or BicA or BicR or Sur or SuxA or b2182 SWALL:BCR_ECOLI (SWALL:P28246) (396 aa) fasta scores: E(): 4.4e-110, 69.13% id in 392 aa.
  
   
 0.414
ECA1573
Probable transporter; Similar to Escherichia coli bicyclomycin resistance protein Bcr or BicA or BicR or Sur or SuxA or b2182 SWALL:BCR_ECOLI (SWALL:P28246) (396 aa) fasta scores: E(): 5e-40, 31.1% id in 389 aa, and to Ralstonia solanacearum probable transport transmembrane protein rsc0216 or rs00648 SWALL:Q8Y2W6 (EMBL:AL646058) (409 aa) fasta scores: E(): 7.1e-61, 45.26% id in 380 aa.
  
   
 0.401
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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