STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4462Electron transport protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 electron transport protein HydN or b2713 or c3269 or z4021 or ecs3569 SWALL:HYDN_ECOLI (SWALL:P30132) (175 aa) fasta scores: E(): 4e-33, 49.71% id in 173 aa. (173 aa)    
Predicted Functional Partners:
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
  
 0.989
hyfG
Similar to Escherichia coli hydrogenase-4 component G HyfG or b2487 SWALL:HYFG_ECOLI (SWALL:P77329) (555 aa) fasta scores: E(): 3.1e-128, 78.03% id in 569 aa.
 
 
 0.876
fdhF
Similar to Escherichia coli formate dehydrogenase H FdhF or b4079 SWALL:FDHF_ECOLI (SWALL:P07658) (715 aa) fasta scores: E(): 2.2e-193, 64.61% id in 715 aa; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.854
ECA1507
Similar to Escherichia coli formate dehydrogenase H FdhF or b4079 SWALL:FDHF_ECOLI (SWALL:P07658) (715 aa) fasta scores: E(): 1.3e-194, 66.52% id in 699 aa; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.853
aegA
Anaerobically expressed oxidoreductase; Similar to Escherichia coli aega protein AegA or b2468 SWALL:AEGA_ECOLI (SWALL:P37127) (659 aa) fasta scores: E(): 3.7e-149, 61.43% id in 656 aa, and to Salmonella typhimurium putative oxidoreductase aega or stm2479 SWALL:Q8ZN79 (EMBL:AE008811) (653 aa) fasta scores: E(): 6e-147, 60.7% id in 649 aa.
   
 
0.805
fdnG
Similar to Escherichia coli formate dehydrogenase, nitrate-inducible, major subunit FdnG or b1474 SWALL:FDNG_ECOLI (SWALL:P24183) (1015 aa) fasta scores: E(): 0, 69.75% id in 1015 aa.
 
  
  0.672
hyfI
Similar to Escherichia coli hydrogenase-4 component I HyfI or b2489 SWALL:HYFI_ECOLI (SWALL:P77668) (252 aa) fasta scores: E(): 5.7e-68, 72.06% id in 247 aa.
 
 
 0.631
hyfC
Similar to Escherichia coli hydrogenase-4 component C HyfC or b2483 SWALL:HYFC_ECOLI (SWALL:P77858) (315 aa) fasta scores: E(): 4.9e-85, 73.35% id in 304 aa.
 
   0.594
hyfH
Similar to Escherichia coli hydrogenase-4 component H HyfH or b2488 SWALL:HYFH_ECOLI (SWALL:P77423) (181 aa) fasta scores: E(): 3.7e-39, 61.44% id in 166 aa.
 
 0.575
fdnI
Formate dehydrogenase, nitrate-inducible, cytochrome b556; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri formate dehydrogenase, nitrate-inducible, cytochrome b556 FdnI or b1476 or z2234 or ecs2080 or sf1749 SWALL:FDNI_ECOLI (SWALL:P24185) (217 aa) fasta scores: E(): 7.5e-70, 78.19% id in 211 aa.
  
  
 0.550
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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