STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4480Probable amino acid ABC transporter, permease protein; Similar to Escherichia coli, and Escherichia coli O6 glutamate/aspartate transport system permease protein GltJ or b0654 or c0738 SWALL:GLTJ_ECOLI (SWALL:P41074) (246 aa) fasta scores: E(): 2.8e-19, 30.94% id in 223 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4281 or agr_l_1164 SWALL:Q8U818 (EMBL:AE009356) (235 aa) fasta scores: E(): 9.3e-48, 57.01% id in 221 aa. (231 aa)    
Predicted Functional Partners:
ECA4478
Amino acid ABC transporter, ATP-binding protein; Similar to Escherichia coli, and Escherichia coli O157:H7 glutamate/aspartate transport ATP-binding protein GltL or b0652 or z0802 or ecs0691 SWALL:GLTL_ECOLI (SWALL:P41076) (241 aa) fasta scores: E(): 5.3e-49, 61.66% id in 240 aa.
 0.996
ECA4479
Similar to Ralstonia solanacearum probable amino acid transmembrane ABC transporter protein rsp0933 or rs05400 SWALL:Q8XRC5 (EMBL:AL646081) (248 aa) fasta scores: E(): 2.3e-55, 60.26% id in 229 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4282 or agr_l_1163 SWALL:Q8U817 (EMBL:AE009356) (252 aa) fasta scores: E(): 1.1e-50, 56.38% id in 227 aa.
 
 
 
0.990
ECA4470
Similar to Yersinia pestis putative periplasmic solute-binding protein ypo4111 or y4125 SWALL:Q8Z9T4 (EMBL:AJ414160) (284 aa) fasta scores: E(): 2e-86, 83.81% id in 278 aa, and to Pseudomonas aeruginosa probable binding protein component of ABC transporter pa2204 SWALL:Q9I1R3 (EMBL:AE004647) (268 aa) fasta scores: E(): 1.6e-55, 58.77% id in 262 aa.
  0.982
glnH
Glutamine-binding periplasmic protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glutamine-binding periplasmic protein precursor GlnH or b0811 or c0896 or z1033 or ecs0889 SWALL:GLNH_ECOLI (SWALL:P10344) (248 aa) fasta scores: E(): 3.8e-79, 87.09% id in 248 aa; Belongs to the bacterial solute-binding protein 3 family.
   0.933
ECA4481
Similar to Agrobacterium tumefaciens short-chain dehydrogenase atu4280 or agr_l_1165 SWALL:Q8U819 (EMBL:AE009356) (259 aa) fasta scores: E(): 9.9e-61, 66.12% id in 245 aa, and to Ralstonia solanacearum probable oxidoreductase protein rsp0935 or rs05398 SWALL:Q8XRC3 (EMBL:AL646081) (250 aa) fasta scores: E(): 4.9e-67, 70.56% id in 248 aa; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    0.878
ECA4489
Putative extracellular solute-binding protein; Similar to Ralstonia solanacearum probable amino-acid-binding periplasmic ABC transporter protein rsp0931 or rs05402 SWALL:Q8XRC7 (EMBL:AL646081) (280 aa) fasta scores: E(): 1.3e-54, 53.4% id in 279 aa, and to Ralstonia solanacearum probable amino-acid-binding periplasmic ABC transporter protein rsc2257 or rs01302 SWALL:Q8XX59 (EMBL:AL646069) (284 aa) fasta scores: E(): 1e-25, 33.33% id in 255 aa.
   0.863
ECA3539
Similar to Methanosarcina mazei glutamine transporter, ATP-binding protein GlnQ or mm1941 SWALL:Q8PVM2 (EMBL:AE013431) (240 aa) fasta scores: E(): 2e-55, 67.5% id in 240 aa, and to Oceanobacillus iheyensis glutamine ABC transporter ATP-binding protein ob1006 SWALL:Q8CUV1 (EMBL:AP004596) (240 aa) fasta scores: E(): 8.9e-55, 64.16% id in 240 aa.
 
 0.853
gltL
Similar to Escherichia coli, and Escherichia coli O157:H7 glutamate/aspartate transport ATP-binding protein GltL or b0652 or z0802 or ecs0691 SWALL:GLTL_ECOLI (SWALL:P41076) (241 aa) fasta scores: E(): 4.5e-73, 87.55% id in 241 aa.
 
 0.842
ECA0854
ABC transporter, ATP-binding protein; Similar to Rhizobium sp. TAL1145 mimosine transporter ATP-binding protein MidC SWALL:Q9EYT0 (EMBL:AF312768) (265 aa) fasta scores: E(): 2.7e-49, 57.55% id in 245 aa, and to Corynebacterium glutamicum ABC-type transporter, ATPase component cgl1330 SWALL:Q8NQU4 (EMBL:AP005278) (250 aa) fasta scores: E(): 1.9e-50, 59.57% id in 235 aa.
 
 0.841
glnQ
Similar to Escherichia coli glutamine transport ATP-binding protein GlnQ or b0809 SWALL:GLNQ_ECOLI (SWALL:P10346) (240 aa) fasta scores: E(): 6.2e-76, 90% id in 240 aa.
 
 0.839
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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