STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nac-2Similar to Escherichia coli nitrogen assimilation regulatory protein Nac or b1988 SWALL:NAC_ECOLI (SWALL:Q47005) (305 aa) fasta scores: E(): 6.6e-56, 52.44% id in 307 aa; Belongs to the LysR transcriptional regulatory family. (307 aa)    
Predicted Functional Partners:
sftR
LysR-family transcriptional regulator; Similar to Pseudomonas putida SftR SWALL:Q9WWU4 (EMBL:AF126201) (304 aa) fasta scores: E(): 1.2e-43, 42.19% id in 301 aa, and to Pseudomonas sp. SDS degradation transcriptional activation protein sdsB SWALL:SDSB_PSES9 (SWALL:P52686) (306 aa) fasta scores: E(): 1.3e-30, 36.53% id in 312 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.764
ECA1965
Similar to Pseudomonas aeruginosa probable transcriptional regulator pa5179 SWALL:Q9HU10 (EMBL:AE004931) (293 aa) fasta scores: E(): 4.3e-38, 41.33% id in 300 aa, and to Pseudomonas putida transcriptional regulator, LysR family pp4601 SWALL:AAN70174 (EMBL:AE016791) (295 aa) fasta scores: E(): 2e-34, 37.91% id in 298 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.752
ECA2642
Similar to Pseudomonas putida transcriptional regulator, LysR family pp4522 SWALL:AAN70096 (EMBL:AE016791) (297 aa) fasta scores: E(): 5.6e-24, 29.64% id in 280 aa, and to Rhizobium loti transcriptional regulator mlr6990 SWALL:Q987M7 (EMBL:AP003010) (299 aa) fasta scores: E(): 4.7e-18, 30.45% id in 266 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.740
hdfR
LysR-family transcriptional regulator; Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon.
  
     0.722
cbl
Similar to Escherichia coli transcriptional regulator Cbl or b1987 SWALL:CBL_ECOLI (SWALL:Q47083) (316 aa) fasta scores: E(): 2.1e-84, 70.34% id in 317 aa, and to Klebsiella aerogenes transcriptional regulator Cbl SWALL:CBL_KLEAE (SWALL:Q08598) (316 aa) fasta scores: E(): 2.5e-85, 71.92% id in 317 aa; Belongs to the LysR transcriptional regulatory family.
  
    0.680
ECA1479
Similar to Agrobacterium tumefaciens transcriptional regulator, LysR family atu5325 or agr_pat_467 SWALL:Q8UJZ9 (EMBL:AE008954) (300 aa) fasta scores: E(): 6.9e-83, 71.33% id in 300 aa, and to Rhizobium loti transcriptional regulator mll2784 SWALL:Q98HN8 (EMBL:AP003000) (307 aa) fasta scores: E(): 1.2e-37, 39.11% id in 294 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.636
ECA3634
Similar to Brucella melitensis transcriptional regulatory protein, LysR family bmeii1135 SWALL:Q8YAW6 (EMBL:AE009745) (297 aa) fasta scores: E(): 5.1e-26, 30.66% id in 287 aa, and to Rhizobium meliloti putative transcription regulator protein r02876 or smc02984 SWALL:Q92LY6 (EMBL:AL591792) (297 aa) fasta scores: E(): 2.4e-28, 33.33% id in 288 aa.
  
     0.602
aatA
Similar to Rhizobium meliloti aspartate aminotransferase A AatA or r02325 or smc01578 SWALL:AATA_RHIME (SWALL:Q02635) (400 aa) fasta scores: E(): 5.9e-80, 50.62% id in 399 aa, and to Agrobacterium tumefaciens aspartate aminotransferase A AatA or atu4278 or agr_l_1171 SWALL:Q8U821 (EMBL:AE009356) (412 aa) fasta scores: E(): 7.9e-115, 72.04% id in 397 aa.
 
    0.570
ECA4481
Similar to Agrobacterium tumefaciens short-chain dehydrogenase atu4280 or agr_l_1165 SWALL:Q8U819 (EMBL:AE009356) (259 aa) fasta scores: E(): 9.9e-61, 66.12% id in 245 aa, and to Ralstonia solanacearum probable oxidoreductase protein rsp0935 or rs05398 SWALL:Q8XRC3 (EMBL:AL646081) (250 aa) fasta scores: E(): 4.9e-67, 70.56% id in 248 aa; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.568
ECA3952
Similar to Pseudomonas putida transcriptional regulator, LysR family pp0698 SWALL:AAN66323 (EMBL:AE016776) (305 aa) fasta scores: E(): 3.1e-76, 64.93% id in 288 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glycine cleavage system transcriptional activator gcva or b2808 or c3378 or z4125 or ecs3668 SWALL:GCVA_ECOLI (SWALL:P32064) (305 aa) fasta scores: E(): 6.4e-26, 33.67% id in 297 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.550
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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