Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ECA4503Similar to Escherichia coli O157:H7 putative acyl carrier protein z4854 or ecs4329 SWALL:Q8X6N3 (EMBL:AE005571) (83 aa) fasta scores: E(): 1.1e-18, 70.73% id in 82 aa, and to Vibrio vulnificus acyl carrier protein vv10048 SWALL:AAO08590 (EMBL:AE016797) (84 aa) fasta scores: E(): 1.9e-14, 56.79% id in 81 aa. (83 aa)    
Predicted Functional Partners:
ECA4504
Similar to Escherichia coli O6 putative acyl carrier protein c1200 SWALL:AAN79662 (EMBL:AE016758) (85 aa) fasta scores: E(): 4.9e-22, 72.94% id in 85 aa, and to Vibrio vulnificus acyl carrier protein vv10047 SWALL:AAO08589 (EMBL:AE016797) (86 aa) fasta scores: E(): 1.5e-18, 65.06% id in 83 aa.
 
 
 0.997
nuoC
NADH-quinone oxidoreductase chain C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 0.979
ECA4494
Putative beta-ketoacyl synthase; Similar to Escherichia coli O157:H7 putative 3-oxoacyl-[ACP] synthase z4863 or ecs4338 SWALL:Q8X6K9 (EMBL:AE005571) (389 aa) fasta scores: E(): 2e-98, 69.58% id in 388 aa, and to Vibrio vulnificus 3-oxoacyl-(acyl-carrier-protein) synthase vv10058 SWALL:AAO08600 (EMBL:AE016797) (395 aa) fasta scores: E(): 1.3e-65, 49.48% id in 390 aa; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.970
ECA4498
Putative thioesterase; Similar to Escherichia coli O6 hypothetical protein c1193 SWALL:AAN79655 (EMBL:AE016758) (140 aa) fasta scores: E(): 5.7e-45, 76.42% id in 140 aa, and to Vibrio vulnificus predicted thioesterase vv10054 SWALL:AAO08596 (EMBL:AE016797) (148 aa) fasta scores: E(): 4.2e-27, 52.3% id in 130 aa.
 
 0.967
ECA4500
Similar to Escherichia coli O6 conserved hypothetical protein c1196 SWALL:AAN79658 (EMBL:AE016758) (125 aa) fasta scores: E(): 3.4e-24, 54.78% id in 115 aa, and to Vibrio vulnificus 3-hydroxymyristoyl/3-hydroxydecanoyl- vv10051 SWALL:AAO08593 (EMBL:AE016797) (123 aa) fasta scores: E(): 2.4e-14, 49.12% id in 114 aa.
 
 0.967
ECA4506
Similar to Escherichia coli O157:H7 hypothetical protein z4851 or ecs4326 SWALL:Q8X6N8 (EMBL:AE005571) (240 aa) fasta scores: E(): 1.2e-50, 55.69% id in 237 aa, and to Pseudomonas syringae conserved hypothetical protein pspto5091 SWALL:Q87V50 (EMBL:AE016874) (239 aa) fasta scores: E(): 5.8e-21, 35.98% id in 239 aa.
 
  0.962
ECA4499
Putative glycosyl transferase; Similar to Escherichia coli O6 putative enzyme c1194 SWALL:AAN79656 (EMBL:AE016758) (540 aa) fasta scores: E(): 2.2e-148, 66.17% id in 541 aa, and to Vibrio vulnificus predicted acyltransferase vv10052 SWALL:AAO08594 (EMBL:AE016797) (569 aa) fasta scores: E(): 1.5e-122, 54% id in 574 aa.
 
 
 0.960
ECA4501
Similar to Escherichia coli O157:H7 putative enzyme z4856 or ecs4331 SWALL:Q8X6M3 (EMBL:AE005571) (453 aa) fasta scores: E(): 3.5e-72, 46.3% id in 447 aa, and to Vibrio vulnificus acyl-coenzyme A synthetase vv10050 SWALL:Q8DG01 (EMBL:AE016797) (455 aa) fasta scores: E(): 9.7e-48, 37.86% id in 441 aa.
 
  
 0.960
ECA4491
Putative beta-ketoacyl-ACP synthase; Similar to Actinobacillus actinomycetemcomitans beta-ketoacyl-ACP synthase IV FabF SWALL:P70719 (EMBL:D88189) (414 aa) fasta scores: E(): 5.7e-93, 56.52% id in 414 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 3-oxoacyl-[acyl-carrier-protein] synthase II fabf or fabj or b1095 or c1365 or z1734 or ecs1473 or sf1099 SWALL:AAN42718 (EMBL:Z34979) (413 aa) fasta scores: E(): 8.9e-46, 38.74% id in 413 aa; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.957
ECA4497
Putative exported protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
    0.953
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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