Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpsT30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (87 aa)    
Predicted Functional Partners:
rplM
50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.996
rpmG
50S ribosomal subunit protein L33.
   
 
 0.996
rpmF
50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.995
rpmA
50S ribosomal subunit protein L27.
  
 
 0.995
rpsU
30S ribosomal subunit protein S21.
  
 
 0.994
rpsO
30S ribosomal subunit protein S15; Belongs to the universal ribosomal protein uS15 family.
  
 
 0.993
rpsB
30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
  
 
 0.991
rpsP
30S ribosomal subunit protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.991
rpsI
30S ribosomal subunit protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.991
rplY
50s ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family.
  
 
 0.990
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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