STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ribFRiboflavin biosynthesis protein RibF; Belongs to the ribF family. (312 aa)    
Predicted Functional Partners:
ribD
Riboflavin biosynthesis protein RibD.
 
  
 0.942
ribE
Riboflavin synthase alpha chain.
  
 
 0.933
yigB
Conserved hypothetical protein.
  
 
 0.912
ybjI
Conserved hypothetical protein.
   
 0.911
hpaC
4-hydroxyphenylacetate 3-monooxygenase coupling protein.
    
  0.908
ubiB
Flavin reductase.
    
  0.905
aphA
Class B acid phosphatase precursor; Belongs to the class B bacterial acid phosphatase family.
     
  0.900
SBG_0042
Conserved hypothetical protein.
     
 0.896
ribH
6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase beta chain).
  
  
 0.882
mviN
Virulence factor MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
    
 0.824
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.