fixX protein (Salmonella bongori) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

fixX

Ferredoxin like protein FixX; Could be a 3Fe-4S cluster-containing protein. (95 aa)

Predicted Functional Partners:

fixB

0.994

fixA

0.992

fixC

0.989

ygcS

0.845

caiA

0.816

caiB

0.749

SBG_3373

0.676

caiC

0.626

truD_1

0.486

hybE

0.462

Your Current Organism:

Salmonella bongori

NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SBG_3373	fixA	SBG_3373	SBG_0060	Conserved hypothetical protein.	FixA protein.	0.716
SBG_3373	fixB	SBG_3373	SBG_0061	Conserved hypothetical protein.	FixB protein.	0.591
SBG_3373	fixX	SBG_3373	SBG_0063	Conserved hypothetical protein.	Ferredoxin like protein FixX; Could be a 3Fe-4S cluster-containing protein.	0.676
caiA	caiB	SBG_0058	SBG_0057	Putative carnitine operon oxidoreductase CaiA.	L-carnitine dehydratase; Catalyzes the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA to L-carnitine to generate L-carnitinyl-CoA and gamma-butyrobetaine. Is also able to catalyze the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA or L- carnitinyl-CoA to crotonobetaine to generate crotonobetainyl-CoA. Belongs to the CoA-transferase III family. CaiB subfamily.	0.984
caiA	caiC	SBG_0058	SBG_0056	Putative carnitine operon oxidoreductase CaiA.	Putative crotonobetaine/carnitine-CoA ligase.	0.951
caiA	fixA	SBG_0058	SBG_0060	Putative carnitine operon oxidoreductase CaiA.	FixA protein.	0.956
caiA	fixB	SBG_0058	SBG_0061	Putative carnitine operon oxidoreductase CaiA.	FixB protein.	0.995
caiA	fixC	SBG_0058	SBG_0062	Putative carnitine operon oxidoreductase CaiA.	FixC protein; Part of an electron transfer system. Belongs to the ETF-QO/FixC family.	0.826
caiA	fixX	SBG_0058	SBG_0063	Putative carnitine operon oxidoreductase CaiA.	Ferredoxin like protein FixX; Could be a 3Fe-4S cluster-containing protein.	0.816
caiA	ygcS	SBG_0058	SBG_0064	Putative carnitine operon oxidoreductase CaiA.	Putative MFS-family transport protein.	0.605
caiB	caiA	SBG_0057	SBG_0058	L-carnitine dehydratase; Catalyzes the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA to L-carnitine to generate L-carnitinyl-CoA and gamma-butyrobetaine. Is also able to catalyze the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA or L- carnitinyl-CoA to crotonobetaine to generate crotonobetainyl-CoA. Belongs to the CoA-transferase III family. CaiB subfamily.	Putative carnitine operon oxidoreductase CaiA.	0.984
caiB	caiC	SBG_0057	SBG_0056	L-carnitine dehydratase; Catalyzes the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA to L-carnitine to generate L-carnitinyl-CoA and gamma-butyrobetaine. Is also able to catalyze the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA or L- carnitinyl-CoA to crotonobetaine to generate crotonobetainyl-CoA. Belongs to the CoA-transferase III family. CaiB subfamily.	Putative crotonobetaine/carnitine-CoA ligase.	0.922
caiB	fixA	SBG_0057	SBG_0060	L-carnitine dehydratase; Catalyzes the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA to L-carnitine to generate L-carnitinyl-CoA and gamma-butyrobetaine. Is also able to catalyze the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA or L- carnitinyl-CoA to crotonobetaine to generate crotonobetainyl-CoA. Belongs to the CoA-transferase III family. CaiB subfamily.	FixA protein.	0.765
caiB	fixB	SBG_0057	SBG_0061	L-carnitine dehydratase; Catalyzes the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA to L-carnitine to generate L-carnitinyl-CoA and gamma-butyrobetaine. Is also able to catalyze the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA or L- carnitinyl-CoA to crotonobetaine to generate crotonobetainyl-CoA. Belongs to the CoA-transferase III family. CaiB subfamily.	FixB protein.	0.765
caiB	fixC	SBG_0057	SBG_0062	L-carnitine dehydratase; Catalyzes the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA to L-carnitine to generate L-carnitinyl-CoA and gamma-butyrobetaine. Is also able to catalyze the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA or L- carnitinyl-CoA to crotonobetaine to generate crotonobetainyl-CoA. Belongs to the CoA-transferase III family. CaiB subfamily.	FixC protein; Part of an electron transfer system. Belongs to the ETF-QO/FixC family.	0.774
caiB	fixX	SBG_0057	SBG_0063	L-carnitine dehydratase; Catalyzes the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA to L-carnitine to generate L-carnitinyl-CoA and gamma-butyrobetaine. Is also able to catalyze the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA or L- carnitinyl-CoA to crotonobetaine to generate crotonobetainyl-CoA. Belongs to the CoA-transferase III family. CaiB subfamily.	Ferredoxin like protein FixX; Could be a 3Fe-4S cluster-containing protein.	0.749
caiB	hybE	SBG_0057	SBG_2743	L-carnitine dehydratase; Catalyzes the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA to L-carnitine to generate L-carnitinyl-CoA and gamma-butyrobetaine. Is also able to catalyze the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA or L- carnitinyl-CoA to crotonobetaine to generate crotonobetainyl-CoA. Belongs to the CoA-transferase III family. CaiB subfamily.	Hydrogenase-2 component protein.	0.412
caiB	ygcS	SBG_0057	SBG_0064	L-carnitine dehydratase; Catalyzes the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA to L-carnitine to generate L-carnitinyl-CoA and gamma-butyrobetaine. Is also able to catalyze the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA or L- carnitinyl-CoA to crotonobetaine to generate crotonobetainyl-CoA. Belongs to the CoA-transferase III family. CaiB subfamily.	Putative MFS-family transport protein.	0.716
caiC	caiA	SBG_0056	SBG_0058	Putative crotonobetaine/carnitine-CoA ligase.	Putative carnitine operon oxidoreductase CaiA.	0.951
caiC	caiB	SBG_0056	SBG_0057	Putative crotonobetaine/carnitine-CoA ligase.	L-carnitine dehydratase; Catalyzes the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA to L-carnitine to generate L-carnitinyl-CoA and gamma-butyrobetaine. Is also able to catalyze the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA or L- carnitinyl-CoA to crotonobetaine to generate crotonobetainyl-CoA. Belongs to the CoA-transferase III family. CaiB subfamily.	0.922

page 1 of 4

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About