STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yabNPutative ABC transporter periplasmic solute binding protein. (552 aa)    
Predicted Functional Partners:
ynfB
Putative secreted protein; Belongs to the UPF0482 family.
  
     0.678
yobD
Putative membrane protein.
  
     0.677
tbpA
Thiamine-binding periplasmic protein precursor.
 
   
 0.652
yiiR
Putative membrane protein.
  
     0.649
yabK
Putative ABC transporter integral membrane protein.
 
     0.645
bssS
Conserved hypothetical protein.
  
     0.645
SBOV13191
Putative membrane protein.
  
     0.640
ybaJ
Conserved hypothetical protein.
  
     0.637
SBG_1044
Putative lipoprotein.
  
     0.627
flgM
Negative regulator of flagellin synthesis (anti-sigma factor).
  
     0.603
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.