STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppdDPrepilin peptidase dependent protein D precursor. (145 aa)    
Predicted Functional Partners:
hofB
Protein transport protein HofB.
  
 0.947
hofC
Protein transport protein HofC.
 
   
 0.929
ppdA
Prepilin peptidase dependent protein A precursor.
 
 
 
 0.851
ppdC
Prepilin peptidase dependent protein C precursor.
      
 0.829
SBOV25871_2
Putative membrane protein.
  
     0.694
STY3215
Conserved hypothetical protein; Belongs to the UPF0149 family.
  
     0.676
yiiQ
Conserved hypothetical protein.
  
     0.590
hopD
Type III leader peptidase.
 
   
 0.583
hofQ
Type II secretion system protein.
 
   
 0.575
mltB
Membrane-bound lytic transglycosylase B precursor.
 
     0.555
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.