STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aroPAromatic amino acid transport protein AroP. (456 aa)    
Predicted Functional Partners:
tyrP
Tyrosine-specific transport protein.
      
 0.627
tyrB
Aromatic-amino-acid aminotransferase.
   
  
 0.624
yicJ_6
Putative symporter.
       0.535
nadC
Nicotinate-nucleotide pyrophosphorylase; Belongs to the NadC/ModD family.
      
 0.531
ampE
AmpE protein.
      
 0.527
mtr
Putative amino acid permease.
      
 0.520
tyrR
Transcriptional regulatory protein TyrR.
      
 0.514
pdhR
Putative bacteriocin immunity protein (pseudogene); Similarity to the uropathogenic E. coli protein found within the putative Usp pathogenicity island. This CDS carries a premature stop codon following codon 84.
      
 0.492
SBG_0139
Putatuve glycosysl hydrolase.
       0.476
puuP
Putative amino acid permease.
  
    0.450
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.