STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdhRPutative bacteriocin immunity protein (pseudogene); Similarity to the uropathogenic E. coli protein found within the putative Usp pathogenicity island. This CDS carries a premature stop codon following codon 84. (254 aa)    
Predicted Functional Partners:
aceE
Pyruvate dehydrogenase E1 component.
  
  
 0.687
mngR
Mannosyl-D-glycerate transport/metabolism system repressor.
  
    0.667
aceF
Dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
  
  
 0.651
nadR
Conserved hypothetical transcriptional regulator.
   
    0.533
tyrR
Transcriptional regulatory protein TyrR.
      
 0.514
ygaE
Putative transcriptional regulator.
  
  
 0.508
lldP
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.500
aroP
Aromatic amino acid transport protein AroP.
      
 0.492
lpdA
Dihydrolipoamide dehydrogenase.
  
  
 0.489
yegW_1
Putative gntR-family transcriptional regulator.
  
    0.466
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.