STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpdADihydrolipoamide dehydrogenase. (475 aa)    
Predicted Functional Partners:
aceF
Dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
 0.999
sucB
Dihydrolipoamide succinyltransferase component (E2).
 0.996
aceE
Pyruvate dehydrogenase E1 component.
 
 
 0.990
sucA
2-oxoglutarate dehydrogenase E1 component.
 
 0.980
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
 
  
 0.969
porB
Putative pyruvate-flavodoxin oxidoreductase.
  
 0.963
gcvP
Glycine dehydrogenase (decarboxylating); Belongs to the GcvP family.
 
 
 0.951
gcvT
Aminomethyltransferase; Belongs to the GcvT family.
 
 0.950
glyA
Serine hydroxymethyltransferase.
  
 0.927
pflB
Formate acetyltransferase 1.
     
 0.907
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.