Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| adi | speB | SBG_3737 | SBG_2688 | Arginine decarboxylase. | Agmatine ureohydrolase; Belongs to the arginase family. | 0.912 |
| adi | speE | SBG_3737 | SBG_0158 | Arginine decarboxylase. | Spermidine synthase. | 0.840 |
| fliM | speE | SBG_1804 | SBG_0158 | Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | Spermidine synthase. | 0.635 |
| gsp | speE | SBG_2738 | SBG_0158 | Glutathionylspermidine synthetase/amidase. | Spermidine synthase. | 0.903 |
| mtn | speE | SBG_0197 | SBG_0158 | MTA/SAH nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily. | Spermidine synthase. | 0.900 |
| patA | speB | SBG_2853 | SBG_2688 | Putative aminotransferase; Catalyzes the aminotransferase reaction from putrescine to 2- oxoglutarate, leading to glutamate and 4-aminobutanal, which spontaneously cyclizes to form 1-pyrroline. This is the first step in one of two pathways for putrescine degradation, where putrescine is converted into 4-aminobutanoate (gamma-aminobutyrate or GABA) via 4- aminobutanal. Also functions as a cadaverine transaminase in a a L- lysine degradation pathway to succinate that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate. | Agmatine ureohydrolase; Belongs to the arginase family. | 0.932 |
| patA | speC | SBG_2853 | SBG_2713 | Putative aminotransferase; Catalyzes the aminotransferase reaction from putrescine to 2- oxoglutarate, leading to glutamate and 4-aminobutanal, which spontaneously cyclizes to form 1-pyrroline. This is the first step in one of two pathways for putrescine degradation, where putrescine is converted into 4-aminobutanoate (gamma-aminobutyrate or GABA) via 4- aminobutanal. Also functions as a cadaverine transaminase in a a L- lysine degradation pathway to succinate that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate. | Ornithine decarboxylase. | 0.905 |
| patA | speC_6 | SBG_2853 | SBG_0591 | Putative aminotransferase; Catalyzes the aminotransferase reaction from putrescine to 2- oxoglutarate, leading to glutamate and 4-aminobutanal, which spontaneously cyclizes to form 1-pyrroline. This is the first step in one of two pathways for putrescine degradation, where putrescine is converted into 4-aminobutanoate (gamma-aminobutyrate or GABA) via 4- aminobutanal. Also functions as a cadaverine transaminase in a a L- lysine degradation pathway to succinate that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate. | Ornithine decarboxylase, inducible. | 0.905 |
| patA | speE | SBG_2853 | SBG_0158 | Putative aminotransferase; Catalyzes the aminotransferase reaction from putrescine to 2- oxoglutarate, leading to glutamate and 4-aminobutanal, which spontaneously cyclizes to form 1-pyrroline. This is the first step in one of two pathways for putrescine degradation, where putrescine is converted into 4-aminobutanoate (gamma-aminobutyrate or GABA) via 4- aminobutanal. Also functions as a cadaverine transaminase in a a L- lysine degradation pathway to succinate that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate. | Spermidine synthase. | 0.911 |
| patA | speG | SBG_2853 | SBG_1329 | Putative aminotransferase; Catalyzes the aminotransferase reaction from putrescine to 2- oxoglutarate, leading to glutamate and 4-aminobutanal, which spontaneously cyclizes to form 1-pyrroline. This is the first step in one of two pathways for putrescine degradation, where putrescine is converted into 4-aminobutanoate (gamma-aminobutyrate or GABA) via 4- aminobutanal. Also functions as a cadaverine transaminase in a a L- lysine degradation pathway to succinate that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate. | Spermidine N1-acetyltransferase. | 0.916 |
| speB | adi | SBG_2688 | SBG_3737 | Agmatine ureohydrolase; Belongs to the arginase family. | Arginine decarboxylase. | 0.912 |
| speB | patA | SBG_2688 | SBG_2853 | Agmatine ureohydrolase; Belongs to the arginase family. | Putative aminotransferase; Catalyzes the aminotransferase reaction from putrescine to 2- oxoglutarate, leading to glutamate and 4-aminobutanal, which spontaneously cyclizes to form 1-pyrroline. This is the first step in one of two pathways for putrescine degradation, where putrescine is converted into 4-aminobutanoate (gamma-aminobutyrate or GABA) via 4- aminobutanal. Also functions as a cadaverine transaminase in a a L- lysine degradation pathway to succinate that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate. | 0.932 |
| speB | speC | SBG_2688 | SBG_2713 | Agmatine ureohydrolase; Belongs to the arginase family. | Ornithine decarboxylase. | 0.982 |
| speB | speC_6 | SBG_2688 | SBG_0591 | Agmatine ureohydrolase; Belongs to the arginase family. | Ornithine decarboxylase, inducible. | 0.980 |
| speB | speD | SBG_2688 | SBG_0157 | Agmatine ureohydrolase; Belongs to the arginase family. | Putative DeoR-family transcriptional regulator (pseudogene); Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 2 subfamily. | 0.651 |
| speB | speE | SBG_2688 | SBG_0158 | Agmatine ureohydrolase; Belongs to the arginase family. | Spermidine synthase. | 0.971 |
| speB | speG | SBG_2688 | SBG_1329 | Agmatine ureohydrolase; Belongs to the arginase family. | Spermidine N1-acetyltransferase. | 0.904 |
| speC | patA | SBG_2713 | SBG_2853 | Ornithine decarboxylase. | Putative aminotransferase; Catalyzes the aminotransferase reaction from putrescine to 2- oxoglutarate, leading to glutamate and 4-aminobutanal, which spontaneously cyclizes to form 1-pyrroline. This is the first step in one of two pathways for putrescine degradation, where putrescine is converted into 4-aminobutanoate (gamma-aminobutyrate or GABA) via 4- aminobutanal. Also functions as a cadaverine transaminase in a a L- lysine degradation pathway to succinate that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate. | 0.905 |
| speC | speB | SBG_2713 | SBG_2688 | Ornithine decarboxylase. | Agmatine ureohydrolase; Belongs to the arginase family. | 0.982 |
| speC | speC_6 | SBG_2713 | SBG_0591 | Ornithine decarboxylase. | Ornithine decarboxylase, inducible. | 0.901 |
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