STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yafAConserved hypothetical protein; Belongs to the UPF0255 family. (414 aa)    
Predicted Functional Partners:
crl
Curlin genes transcriptional activator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
 
     0.820
yijD
Putative membrane protein.
  
     0.772
ybfA
Putative exported protein.
  
     0.754
yihD
Conserved hypothetical protein.
  
     0.749
yciN
Conserved hypothetical protein.
  
     0.744
yaeP
Conserved hypothetical protein; Belongs to the UPF0253 family.
  
     0.737
ytfK
Conserved hypothetical protein.
  
     0.730
SBG_2706
Conserved hypothetical protein.
  
     0.710
yafD
Conserved hypothetical protein.
  
     0.708
yfbU
Conserved hypothetical protein; Belongs to the UPF0304 family.
  
     0.705
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.