Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| STY1080_1 | crl | SBG_0861 | SBG_0260 | Conserved hypothetical protein. | Curlin genes transcriptional activator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family. | 0.719 |
| STY1080_1 | lppA | SBG_0861 | SBG_1216 | Conserved hypothetical protein. | Major outer membrane lipoprotein. | 0.633 |
| STY1080_1 | yafA | SBG_0861 | SBG_0259 | Conserved hypothetical protein. | Conserved hypothetical protein; Belongs to the UPF0255 family. | 0.697 |
| STY1080_1 | ycfP | SBG_0861 | SBG_1048 | Conserved hypothetical protein. | Conserved hypothetical protein; Belongs to the UPF0227 family. | 0.704 |
| STY1080_1 | yciN | SBG_0861 | SBG_1578 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.656 |
| STY1080_1 | yieM | SBG_0861 | SBG_3431 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.746 |
| STY1080_1 | yijD | SBG_0861 | SBG_3618 | Conserved hypothetical protein. | Putative membrane protein. | 0.643 |
| STY1080_1 | ytfK | SBG_0861 | SBG_3850 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.753 |
| crl | STY1080_1 | SBG_0260 | SBG_0861 | Curlin genes transcriptional activator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family. | Conserved hypothetical protein. | 0.719 |
| crl | cybC | SBG_0260 | SBG_3863 | Curlin genes transcriptional activator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family. | Soluble cytochrome b562. | 0.754 |
| crl | lppA | SBG_0260 | SBG_1216 | Curlin genes transcriptional activator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family. | Major outer membrane lipoprotein. | 0.631 |
| crl | rpoS | SBG_0260 | SBG_2538 | Curlin genes transcriptional activator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family. | RNA polymerase sigma subunit RpoS (sigma-38); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.750 |
| crl | yafA | SBG_0260 | SBG_0259 | Curlin genes transcriptional activator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family. | Conserved hypothetical protein; Belongs to the UPF0255 family. | 0.820 |
| crl | ycfP | SBG_0260 | SBG_1048 | Curlin genes transcriptional activator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family. | Conserved hypothetical protein; Belongs to the UPF0227 family. | 0.675 |
| crl | yciN | SBG_0260 | SBG_1578 | Curlin genes transcriptional activator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family. | Conserved hypothetical protein. | 0.679 |
| crl | yieM | SBG_0260 | SBG_3431 | Curlin genes transcriptional activator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family. | Conserved hypothetical protein. | 0.721 |
| crl | yijD | SBG_0260 | SBG_3618 | Curlin genes transcriptional activator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family. | Putative membrane protein. | 0.610 |
| crl | ytfK | SBG_0260 | SBG_3850 | Curlin genes transcriptional activator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family. | Conserved hypothetical protein. | 0.767 |
| cybC | crl | SBG_3863 | SBG_0260 | Soluble cytochrome b562. | Curlin genes transcriptional activator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family. | 0.754 |
| lppA | STY1080_1 | SBG_1216 | SBG_0861 | Major outer membrane lipoprotein. | Conserved hypothetical protein. | 0.633 |
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