STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykfGHypothetical prophage protein; Similar to the C-terminus of RadC and many putative RadC-like DNA repair proteins. (166 aa)    
Predicted Functional Partners:
SBG_0277
Hypothetical prophage protein.
  
  
 0.752
SBG_3115
Putative competence protein.
 
    0.645
yhdE
Conserved hypothetical protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
 
  
 0.639
mreC
Rod shape-determining protein.
  
  
 0.632
SBG_1027
Conserved hypothetical protein.
  
  
 0.598
mutS
DNA mismatch repair protein; Belongs to the DNA mismatch repair MutS family.
 
   
 0.575
bscA
Cellulose biosynthesis protein catalytic subunit A; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose.
  
    0.566
ycaI
Putative competence-related protein.
 
  
 0.546
SBG_0276
Hypothetical prophage protein.
  
    0.532
dprA
Conserved hypothetical protein.
  
  
 0.513
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.