STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBG_0281Hypothetical prophage protein. (277 aa)    
Predicted Functional Partners:
hcpA_1
Conserved hypothetical protein.
  
     0.636
SBG_0476
Conserved hypothetical protein.
  
     0.607
SBG_3121
Putative inner membrane protein.
  
     0.592
SBG_0249
Putative autotransporter; Similarities to ShdA and SapA are extensive but weak.
  
     0.572
secM
Secretion monitor precursor; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.534
SBG_0282
Hypothetical prophage protein; The longer N-terminus in the database hit.
       0.524
SBG_0280
Hypothetical prophage protein.
       0.508
SBG_0283
Hypothetical prophage protein.
       0.505
dmsC3
Putative dimethyl sulfoxide reductase subunit C.
  
     0.491
yccT
Putative secreted protein; Belongs to the UPF0319 family.
  
     0.483
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.