STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sbePPrepilin peptidase; Belongs to the peptidase A24 family. (273 aa)    
Predicted Functional Partners:
sbeH
Pilin-related type II secretion protein.
 
 
 0.959
sbeI
Pilin-related type II secretion protein; Alternative possible translational start site.
 
  
 0.904
hofC
Protein transport protein HofC.
 
  
 0.863
hofB
Protein transport protein HofB.
 
 
 0.847
pilT
Type II secretion, ATP-binding, protein.
 
   
 0.812
sbeD
Pilus biosynthesis outer membrane lipoprotein.
     
 0.782
sbeF
Exported pilus-related protein.
       0.751
sbeG
Exported pilin-related protein.
       0.751
sbeE
Pilus-related membrane protein.
       0.746
ycaI
Putative competence-related protein.
  
  
 0.701
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.