STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
actP_2Putative cation transport ATPase. (762 aa)    
Predicted Functional Partners:
hmrR
Putative MerR-family transcriptional regulatory protein.
 
  
 0.849
atcU
Copper-transporting ATPase.
 
 
0.786
porB
Putative pyruvate-flavodoxin oxidoreductase.
  
  
 0.604
cueR
Copper efflux regulator.
 
  
 0.463
SBG_0307
Putative cation transport poprotein.
  
  
 0.445
oprM
Putative cation transport lipoprotein.
  
  
 0.439
bepE_3
Putative cation transport protein.
     
 0.426
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.