STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmrRPutative MerR-family transcriptional regulatory protein. (156 aa)    
Predicted Functional Partners:
actP_2
Putative cation transport ATPase.
 
  
 0.849
yacC
Conserved hypothetical protein.
      
 0.621
rpoD
RNA polymerase sigma-70 factor.
   
 
 0.560
arcB
Aerobic respiration control sensor protein.
   
 
 0.533
yrfE
Putative NUDIX hydrolase.
   
    0.533
porB
Putative pyruvate-flavodoxin oxidoreductase.
   
 
 0.491
atcU
Copper-transporting ATPase.
 
  
 0.459
oprM
Putative cation transport lipoprotein.
     
 0.441
bepE_3
Putative cation transport protein.
   
   0.422
SBG_0307
Putative cation transport poprotein.
     
 0.418
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.