STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ampHPenicillin-binding protein AmpH. (385 aa)    
Predicted Functional Partners:
dacD
Penicillin-binding protein; Belongs to the peptidase S11 family.
      
 0.828
SBG_1642
Putative inner membrane protein.
  
     0.687
csiE
Stationary phase inducible protein CsiE.
  
     0.682
bssS
Conserved hypothetical protein.
  
     0.598
yhhK
Conserved hypothetical protein; Controls both the activation and catalytic activity of PanD in a coenzyme A (CoA)-dependent fashion; Belongs to the PanZ/PanM family.
  
   
 0.573
rstB
Two component sensor kinase.
  
    0.557
flgA
Flagellar basal body P-ring protein FlgA precursor; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
  
     0.530
ftsI2
Penicillin-binding protein; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.
      
 0.517
SBOV13191
Putative membrane protein.
  
     0.516
ynfB
Putative secreted protein; Belongs to the UPF0482 family.
  
     0.515
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.