STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tsaA_1Putative peroxidase. (200 aa)    
Predicted Functional Partners:
ahpF
Alkyl hydroperoxide reductase F52A protein (subunit F).
 
  
 0.823
trxB
Thioredoxin reductase.
  
 
 0.816
katE
Catalase HPII.
  
 
 0.678
scsD
Secreted protein, suppressor for copper-sensitivity D.
  
 0.677
dsbE2
Thiol:disulfide interchange protein; That this CDS is identical to SBG3375.
  
 0.677
dsbE
Thiol:disulfide interchange protein; That this CDS is identical to SBG2046.
  
 0.677
porB
Putative pyruvate-flavodoxin oxidoreductase.
  
  
 0.645
fur
Ferric uptake regulation protein; Belongs to the Fur family.
  
  
 0.606
dps
DNA protection during starvation protein; During stationary phase, binds the chromosome non- specifically, forming a highly ordered and stable dps-DNA co-crystal within which chromosomal DNA is condensed and protected from diverse damages. It protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction; Belongs to the Dps family.
  
  
 0.575
norV_3
Putative flavoprotein.
  
  
 0.535
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.