STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdlAPutative ABC transporter ATP-binding membrane protein. (590 aa)    
Predicted Functional Partners:
mdlB
Putative ABC transporter ATP-binding membrane protein.
 
 
 
0.990
ybbL
Putative ABC transporter ATP-binding protein.
 
    
0.907
yehX
ABC transporter ATP-binding protein.
 
     
0.838
potG
Putrescine transport ATP-binding protein PotG.
 
 
   
0.767
ybaO
Hypothetical transcriptional regulator.
  
    0.673
ybhF_1
Hypothetical ABC transporter ATP-binding protein.
  
0.521
malK_1
ABC transporter ATP-binding protein.
 
    
0.517
metN_3
Putative ABC transporter ATP-binding protein.
 
     
0.488
yadG
Hypothetical ABC transporter ATP-binding protein.
 
0.485
SBG_0403
Putative lyase.
  
  
 0.481
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.