STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmE2Putative 50s ribosomal protein L31 (second copy). (86 aa)    
Predicted Functional Partners:
rpsP
30S ribosomal subunit protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.989
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.988
rplS
50S ribosomal subunit protein L19.
  
 
 0.987
rpsO
30S ribosomal subunit protein S15; Belongs to the universal ribosomal protein uS15 family.
  
 
 0.987
rpmA
50S ribosomal subunit protein L27.
  
 
 0.987
rpmF
50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.986
rplM
50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.986
rplT
50S ribosomal subunit protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.985
rpsI
30S ribosomal subunit protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.984
rpmI
50S ribosomal subunit protein L35; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.983
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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