STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybaJConserved hypothetical protein. (124 aa)    
Predicted Functional Partners:
hha
Haemolysin expression modulating protein.
 
  
 0.996
SBG_1044
Putative lipoprotein.
  
     0.774
tus
DNA replication terminus site-binding protein; DNA sequence-specific contrahelicase.
  
     0.770
SBG_2980
Conserved hypothetical protein.
  
   
 0.770
yciC
Putative membrane protein.
  
     0.768
flgM
Negative regulator of flagellin synthesis (anti-sigma factor).
  
     0.767
sseB
SseB protein.
  
     0.767
mzrA
Putative exported protein; Modulates the activity of the EnvZ/OmpR two-component regulatory system, probably by directly modulating EnvZ enzymatic activity and increasing stability of phosphorylated OmpR.
  
     0.767
cpxP
Extracytoplasmic stress protein for protein-mediated toxicities.
  
     0.767
uspB
Universal stress protein B.
  
   
 0.765
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.