STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbLPutative ABC transporter ATP-binding protein. (225 aa)    
Predicted Functional Partners:
ybbM
Putative membrane protein.
 
  
 0.975
qmcA_1
Putative membrane protein.
     
 0.915
mdlA
Putative ABC transporter ATP-binding membrane protein.
 
    
0.907
pstB
Phosphate transport ATP-binding protein.
 
    
0.905
artM_1
Putative ABC-transport ATP-binding protein.
 
    
0.898
ybbO
Hypothetical oxidoreductase.
     
 0.840
gltL
Glutamate/aspartate transport ATP-binding protein GltL.
 
    
0.702
ecfA1_2
Putative ABC-transport protein, ATP-binding component.
 
     0.646
mdlB
Putative ABC transporter ATP-binding membrane protein.
 
    
0.632
gsiA_1
Putative ABC transport ATP-binding protein.
 
     0.544
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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