Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
manX_2PTS-family sugar transport protein component IIB. (156 aa)    
Predicted Functional Partners:
manZ_5
PTS-family sugar transport protein component IID.
 
 0.997
manY_2
PTS-family sugar transport protein component IIC.
 
 0.997
manX_1
PTS-family sugar transport protein component IIB.
 
 
 0.997
agaC_2
PTS system, IIc component.
 
 0.977
manZ_6
PTS system IId component.
 
 0.977
manX_3
PTS system, IIa component.
 
 
 0.973
ptsH
Phosphocarrier protein HPr.
   
 0.917
sorB
PTS system, IIb component.
  
  
 
0.911
manZ
Phosphotransferase enzyme II, D component.
 
 
 0.892
manZ_2
Putative PTS system protein.
 
 
 0.892
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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