STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
citBCitrate utilization protein B. (379 aa)    
Predicted Functional Partners:
ifcA
Conserved hypothetical protein.
 
 
 0.988
porB
Putative pyruvate-flavodoxin oxidoreductase.
  
  
 0.977
citA
Citrate-proton symporter.
     
 0.934
catM
lysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
 
   0.884
nuoE
NADH dehydrogenase I chain E.
   
 
 0.725
fdhF
Formate dehydrogenase H; This CDS contains a UGA stop codon which is readthrough as an opal codon by the selenocysteine tRNA.
   
 
 0.725
fixA
FixA protein.
   
 
 0.723
sdhA
Succinate dehydrogenase flavoprotein subunit.
  
 
 0.649
frdA
Fumarate reductase, flavoprotein subunit.
  
 
 0.649
napD
Putative napAB assembly protein.
  
  
 0.645
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.