STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
catMlysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (308 aa)    
Predicted Functional Partners:
citB
Citrate utilization protein B.
 
 
   0.884
ifcA
Conserved hypothetical protein.
 
   
 0.858
gbpR
Putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.773
gltC
Putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.718
ydcI
Putative LysR0-family transcriptional regulatory protein.
  
     0.703
allS_2
Hypothetical lysR-family transcriptional regulator.
  
     0.663
gltR_2
Putative regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
     0.660
gltR_1
Putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.619
dmlR_7
Putative LysR-family transcriptional regulatory protein.
  
     0.593
abgR
Putative LysR-family transcriptional regulatory protein; Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon.
  
     0.589
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.