STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phrBDeoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family. (473 aa)    
Predicted Functional Partners:
SBG_1230
Putative pathogenicity island protein.
  
  
 0.902
ifcA
Conserved hypothetical protein.
      
 0.623
SBG_0600
Putative exported protein.
       0.590
SBG_0601
Putative exported protein.
       0.547
porB
Putative pyruvate-flavodoxin oxidoreductase.
       0.539
hcpA_2
Hypothetical protein; Database matches are either to the N- or C-terminus only.
       0.511
ybeY
Conserved hypothetical protein.
    
   0.463
wzb
Putative protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
    
   0.463
infB
Protein chain initiation factor 2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.
    
   0.463
ycgE_1
Putative transcriptional regulator.
 
  
 0.452
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.