STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybiHHypothetical tetR-family transcriptional regulator. (224 aa)    
Predicted Functional Partners:
macA_3
HlyD-family secretion protein.
 
  
 0.926
ybhF
Hypothetical ABC transporter ATP-binding protein.
 
    0.903
ybhS_4
Putative inner membrane protein.
 
  
 0.896
ybhR
Putative inner membrane protein.
 
  
 0.814
yadI
Putative PTS system IIA component.
  
     0.588
cutF
Copper homeostasis protein CutF precursor (lipoprotein nlpE).
  
     0.578
SBG_1437
Putative transferase.
  
     0.570
yjdC
tRNA-Phe; tRNA Phe anticodon GAA, Cove score 75.98.
  
   
 0.568
kefA_2
Integral membrane protein AefA.
  
     0.567
nanT
Putative sialic acid transporter.
  
     0.546
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.