STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybiYPutative pyruvate formate-lyase 3 activating enzyme. (299 aa)    
Predicted Functional Partners:
ybiW
Putative formate acetyltransferase 3.
 
  
 0.983
pflB
Formate acetyltransferase 1.
 
  
 0.876
tdcE
Putative formate acetyltransferase.
 
  
 0.876
porB
Putative pyruvate-flavodoxin oxidoreductase.
     
 0.829
ansB
L-asparaginase; Belongs to the asparaginase 1 family.
      
 0.828
yfiD
Conserved hypothetical protein; Acts as a radical domain for damaged PFL and possibly other radical proteins.
  
   
 0.778
adh
Alcohol dehydrogenase.
 
  
 0.699
fnr
Fumarate and nitrate reduction regulatory protein.
      
 0.627
adhB
Putative alcohol dehydrogenase.
 
  
 0.444
fucO
Alcohol dehydrogenase.
 
  
 0.439
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.