STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yliDHypothetical ABC transporter permease protein. (303 aa)    
Predicted Functional Partners:
gsiA_4
Hypothetical ABC transporter ATP-binding protein.
 
 0.999
yliC
Hypothetical ABC transporter permease protein.
 
 0.999
yliB
Putative ABC transporter periplasmic binding protein.
 0.996
oppD
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
  
 0.969
dppD
Dipeptide transport ATP-binding protein DppD.
  
 0.969
oppF
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
  
 0.964
sapD
Peptide transport system ATP-binding protein SapD; Belongs to the ABC transporter superfamily.
 
   
 0.948
dppF
Dipeptide transport ATP-binding protein DppF.
 
 0.935
sapF
Peptide transport system ATP-binding protein SapF.
 
     0.896
yejF
Putative ABC-transporter ATP-binding protein.
  
 0.888
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.