STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdfAMultidrug translocase MdfA. (416 aa)    
Predicted Functional Partners:
rimK
Ribosomal protein S6 modification protein; Belongs to the RimK family.
   
    0.899
ydhE
Hypothetical integral membrane protein; Multidrug efflux pump that functions probably as a Na(+)/drug antiporter; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. MdtK subfamily.
     
 0.896
tolC
Outer membrane protein TolC precursor.
   
  
 0.833
acrA
Acriflavin resistance protein A precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  
 0.830
marA
Multiple antibiotic resistance protein MarA.
      
 0.783
acrD
Putative efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   
  
 0.776
SBG_2083
Conserved hypothetical protein; Sequence similarity extends further upstream for these two CDS but the only suitable translational start site for S. bongori would incorporate a stop codon into the sequence. Consequently it is possible that this CDS is a pseudogene.
  
     0.618
acrF
Acriflavin resistance protein F.
      
 0.610
emrB
Multidrug resistance protein B; Belongs to the major facilitator superfamily.
  
   
 0.581
ybjG
Putative permease protein.
     
 0.568
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.