STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybjYPutative exported protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (372 aa)    
Predicted Functional Partners:
ybjZ
Conserved hypothetical ABC transporter; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.999
tolC
Outer membrane protein TolC precursor.
  
 
 0.934
acrD
Putative efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.711
acrB
Acriflavin resistance protein B.
 
 
 0.684
acrF
Acriflavin resistance protein F.
 
 
 0.676
bepE_3
Putative cation transport protein.
 
 
 0.604
bepE_2
Integral membrane component of membrane efflux system; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.565
porB
Putative pyruvate-flavodoxin oxidoreductase.
   
   0.545
SBG_0801
Putative virK protein.
       0.534
mdtC_1
Putative RND-family transporter protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.496
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.